Feb 4th, 2012  General Structure Nodes Proteomics Facilities Management Board Scientific Advisory Board User Committee Coming Events Past Events ProteoRed Multicentric Experiments   Advanced Proteomics Data Analysis Barcelona, 25th-29th January, 2010 Final program (pdf)   Google group: http://groups.google.com/group/bioinformatica-proteomica   Suscribirte a bioinformatica-proteomica Correo electrónico: Consultar este grupo   Additional data: ftp://estrellapolar.cnb.csic.es/bioinformaticaCurso/Curso_Ordenado   Presentations   Introduction (Alex Campos & Salvador Martínez de Bartolomé)       Introduction -> (pdf)       AWK -> First page of (pdf)       R -> From second page of (pdf)       Perl Introduction -> (pdf)       Mayu -> (pdf)       The PATH variable -> (pdf)           Open source proteomics data formats (Parag Mallick)       Proteomics Data Formats and Conversion -> (ppt)           Label-free quantification with Progenesis LC-MS (Martin Wells)       Label-free quantification with Progenesis LC-MS -> (pdf)         MS/MS database & spectral library searching (Jimmy Eng)       MS/MS database & spectral library searching -> (ppt)       Sequence Databases -> (ppt)       Tutorial: Database search -> (doc)         ProteoWizard Project (Parag Mallick)       ProteoWizard Project -> (pdf)           Trans-Proteomics Pipeline (David Shteynberg)       PETUNIA:The Graphical User Interface for the TPP -> (pdf)               Probability assignment and validation of peptide identifications with PeptideProphet -> (pdf)       Tutorial for PeptideProphet -> (pdf)               Combining multiple database searches with iProphet -> (pdf)       Tutorial for iProphet -> (pdf)               Protein inference with ProteinProphet -> (pdf)       Tutorial ProteinProphet -> (pdf)               MS1-based quantification with XPress and ASAPRatio -> (pdf)       XPress and ASAPRatio Tutorial -> (pdf)               MS2-based quantification with Libra (TMT and iTRAQ) -> (pdf)       Libra Tutorial -> (pdf)               Mining protein lists with PIPE - Protein Information and Property Explorer -> ()           Qurate and msInspect (Damon May)       Qurate, a tool for visually assessing quantitative events -> (pdf)       Using msInspect tools for quantitation -> (pdf)       Accurate Mass and Time with msInspect -> (ppt)       AMT Tutorial page -> (http://proteomics.fhcrc.org/CPL/amt/amt_tutorial.html)       Software platforms for proteomics development -> (pdf)           R (David rossell)       Mass-spectrometry data analysis principles -> (pdf)       Using R to mine quantitative proteomics data -> ()       False Discovery Rates of Protein Identifications: A Strike against the Two-Peptide Rule. JPR paper -> (pdf)         Proteios software environment (Fredrick Levander)       Proteios software environment: an extensive multiuser platform for management and analysis of proteomics data -> (pdf)       Proteios Tutorial -> ()                 @2009 ProteoRed. All rights reserved. Credits