ProteoRed - Instituto Nacional de Proteómica Jan 6th, 2009 

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Related Links
HUPO
www.hupo.org
EuPA
www.eupa.org
SEProt
www2.cbm.uam.es/seprot

Bioinformatics course: MS bioinformatics analysis for proteomics
Madrid, 21st-23rd October, 2008


Agenda (pdf)
 
Final program (pdf)
 
Presentations

  Protein Databases

      Proteomics database contents (pdf)
      Practical session (doc)
      Practical session corrections (ppt)
     
     
  Protein Identification

      Mass Spectrometry Introduction (pdf)
      Peptide fragmentation (pdf)
      Mapeo peptídico (pdf)
      Spectra (pdf)
      Spectra for de novo sequencing (pdf)
      De novo practical session (pdf)
      Mascot (pdf)
      ejemplos Mascot (xls)
    Unifica_Dtas.bat (bat)
     
  Data Validation

      Basic Statistical concepts (pdf)
      MS/MS searches & validation methods - The Trans-Proteomics Pipeline (TPP) (pdf)
     

MS/MS searches & validation methods - The Probability Ratio Method (pdf)

      TPP practical session (pdf)
     
     
  Data Integration

      Standards in proteomics (pdf)
    Annotations (pdf)
    Repositories (pdf)
    Data(rar)
     
     
  Quantitation

      Quantitation presentation (pdf)
      Quantitation statistics (pdf)
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