| Final program (pdf) |
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Program and presentations
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| 9:00–9:15 |
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Welcome Reception. |
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Xosé Bustelo, CIC, Salamanca, SP. |
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| 9:15–9:45 |
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Introduction: Relevance of Proteomics Standards for ProteoRed. () |
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J. Pablo Albar, ProteoRed, CNB-CSIC, Madrid, SP. |
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1st Session. MultiCenter Projects. Collaborative environment.
Chairs: Alberto Medina and Andrew Jones. |
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| 9:45–10:15 |
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PRIDE: current status and future plans. |
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J. Antonio Vizcaino, EMBL-EBI, Cambridge, UK. |
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| 10:15-10:45 |
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MIAPEs in ProteoRed Multicentric Experiments. |
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Salvador Martínez de Bartolomé, ProteoRed, CNB-CSIC, Madrid, SP. |
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| 10:45–11:15 |
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OmicsHub Proteomics: Recent use cases. |
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Eduardo González Couto, Integromics, Tres Cantos, SP. |
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| Coffe break (30min) |
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2nd Session. Proteomics bioinformatics applications.
Chairs: Juan Pablo Albar and Javier de las Rivas |
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| 11:45–12:15 |
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New improvements in MIAPE generation: MIAPE API. |
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Emilio Salazar, ProteoRed, CNB-CSIC, Madrid, SP. |
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| 12:15–12:45 |
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LC/MS data processing for label-free quantitative analysis with MSight and SuperHirn and other MS stories. |
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Patricia Palagi, Swiss Institute of Bioinformatics (SIB), Geneva, SW. |
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| 12:45–13:15 |
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Data validation and annotation: PrideViewer & PIKE. |
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Alberto Medina, ProteoRed, CNB-CSIC, Madrid,SP. |
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| 13:15–13:45 |
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MS-LIMS and friends: tools to store and analyze large scale proteomics data. |
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Kenny Helsens, Gent University, BEL. |
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| Lunch (1h 15min) |
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3rd Session. Proteomics Standards: Current Status.
Chairs: Salvador Martínez and J. Antonio Vizcaíno. |
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| 15:00–15:30 |
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Data standards developed by the Proteomics Standards Initiative. |
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Andrew Jones, University of Liverpool, UK. |
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| 15:30–16:00 |
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Phosphosite characterization in human T-cell proteome: Minimal Information About Sample Preparation for Phosphoproteomics (MIASPE). |
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Montserrat Carrascal, ProteoRed, LP-CSIC-UAB, Barcelona, SP. |
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| 16:00–16:30 |
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From single proteins to protein interactions and protein networks derived. |
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Javier De las Rivas, CIC-USAL, Salamanca, SP |
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| Coffee break (30min) |
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Discussion Panel
Chairs: J. Pablo Albar and Xosé Bustelo. |
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Software tutorials and demos
Conducted by: Miguel Ángel López García and speakers |
